Thermodynamics and kinetics of base-pairing

• Introduction
• Methods
• Arrangement of data
• List of symbols and abbreviations
• Thermodynamic parameters for duplex formation by RNA oligonucleotides
• Thermodynamic parameters for oligonucleotides with loops
• Thermodynamic parameters for coil-helix transition in single stranded RNA
• Thermodynamic parameters for duplex formation by DNA oligonucleotides
• Thermodynamic parameters for duplex formation by DNA oligonucleotides containing mismatches
• Thermodynamic parameters for helix initiation and propagation in 1 M NaCl.
• Bimolecular helix initiation for RNA and DNA
• Free energy increments for internal G:U pairs in RNA oligonucleotides
• Free energy parameters for RNA helix termini
• Free energy increments for loops
• Thermodynamic parameters for single mismatches in DNA oligonucleotides
• Kinetic parameters for double helix formation by oligonucleotides
• Kinetics of hairpin loop formation by oligomers
• Kinetic parameters for binding between tRNA and oligonucleotides
• Kinetics of tRNA associations through complementary anticodons
• Kinetics of double helix formation for polynucleotides
• Kinetic parameters for intramolecular conformational changes in RNA
• Kinetic parameters for stacking in single strands
• References